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for spirals in Bigiel 2008 (seven spirals in Table 1): logΣH2 [Msun pc^-2] range: (0.61, 2.79) logΣHI [Msun pc^-2] range: (0.19, 1.29) logΣSFR [Msun yr^-1 kpc^-2] range: (-2.99, -0.33) ªtext/plain§cell_idÙ$254b9b44-4025-4927-841f-f0d0b2062f23¦kwargs¢id´PlutoRunner_d1acb81e¤fileÙP/home/runner/.julia/packages/Pluto/F6SNP/src/runner/PlutoRunner/src/io/stdout.jl¥group¦stdout¥level®LogLevel(-555)§running¦output†¤body ¤mimeªtext/plain¬rootassigneeÀ²last_run_timestampËAÚ¥¹·oe8°persist_js_state·has_pluto_hook_features§cell_idÙ$254b9b44-4025-4927-841f-f0d0b2062f23¹depends_on_disabled_cells§runtimeÎëtaµpublished_object_keys¸depends_on_skipped_cells§erroredÂÙ$198d1cbd-dfe4-4dda-b04f-bea7f24421bbŠ¦queued¤logs§running¦output†¤bodyÛùô¤mime©text/html¬rootassigneeÀ²last_run_timestampËAÚ¥¹¶EpC°persist_js_state·has_pluto_hook_features§cell_idÙ$198d1cbd-dfe4-4dda-b04f-bea7f24421bb¹depends_on_disabled_cells§runtimeÏU{÷µµpublished_object_keys¸depends_on_skipped_cells§erroredÂÙ$6797146a-b3a5-4cf0-bf2d-80f0934bb52bŠ¦queued¤logs‘ˆ¤lineÿ£msg’ÚTable 2: HI: log10 range [M⊙ kpc^-2]: (6.13, 7.33) H2: log10 range [M⊙ kpc^-2]: (6.61, 8.79) SFR: log10 range [M⊙ kpc^-2 yr^-1]: (-3.7, -0.33) Table 3: HI: log10 range [M⊙ kpc^-2]: (5.74, 7.59) SFR: log10 range [M⊙ kpc^-2 yr^-1]: (-4.7, -2.14) ªtext/plain§cell_idÙ$6797146a-b3a5-4cf0-bf2d-80f0934bb52b¦kwargs¢id´PlutoRunner_d1acb81e¤fileÙP/home/runner/.julia/packages/Pluto/F6SNP/src/runner/PlutoRunner/src/io/stdout.jl¥group¦stdout¥level®LogLevel(-555)§running¦output†¤body ¤mimeªtext/plain¬rootassigneeÀ²last_run_timestampËAÚ¥¹·PT›°persist_js_state·has_pluto_hook_features§cell_idÙ$6797146a-b3a5-4cf0-bf2d-80f0934bb52b¹depends_on_disabled_cells§runtimeÎvšÿÁµpublished_object_keys¸depends_on_skipped_cells§erroredÂÙ$e0fd87d5-087b-489f-88ba-13cb5e43cf1bŠ¦queued¤logs§running¦output†¤body ¤mimeªtext/plain¬rootassigneeÀ²last_run_timestampËAÚ¥¹¶Ãj°persist_js_state·has_pluto_hook_features§cell_idÙ$e0fd87d5-087b-489f-88ba-13cb5e43cf1b¹depends_on_disabled_cells§runtimeÎäµpublished_object_keys¸depends_on_skipped_cells§erroredÂÙ$48c1620d-ecff-4367-bda8-41a3a4ce587dŠ¦queued¤logs§running¦output†¤bodyÚí

Bigiel et al. (2010)

Data 01

Data 02

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Waiting for other notebooks to finish Pkg operations... === Resolving... ===  Project No packages added to or removed from `~/.julia/scratchspaces/c3e4b0f8-55cb-11ea-2926-15256bba5781/pkg_envs/env_zmqotbvsim/Project.toml`  Updating `~/.julia/scratchspaces/c3e4b0f8-55cb-11ea-2926-15256bba5781/pkg_envs/env_zmqotbvsim/Manifest.toml` [e66e0078] ↑ CompilerSupportLibraries_jll v1.3.0+1 ⇒ v1.3.1+2 [458c3c95] ↑ OpenSSL_jll v3.5.4+0 ⇒ v3.5.6+0 Instantiating... === Precompiling... ===ªCairoMakieÚ  Waiting for other notebooks to finish Pkg operations... === Resolving... ===  Project No packages added to or removed from `~/.julia/scratchspaces/c3e4b0f8-55cb-11ea-2926-15256bba5781/pkg_envs/env_zmqotbvsim/Project.toml`  Updating `~/.julia/scratchspaces/c3e4b0f8-55cb-11ea-2926-15256bba5781/pkg_envs/env_zmqotbvsim/Manifest.toml` [e66e0078] ↑ CompilerSupportLibraries_jll v1.3.0+1 ⇒ v1.3.1+2 [458c3c95] ↑ OpenSSL_jll v3.5.4+0 ⇒ v3.5.6+0 Instantiating... === Precompiling... ===§UnitfulÚ  Waiting for other notebooks to finish Pkg operations... === Resolving... ===  Project No packages added to or removed from `~/.julia/scratchspaces/c3e4b0f8-55cb-11ea-2926-15256bba5781/pkg_envs/env_zmqotbvsim/Project.toml`  Updating `~/.julia/scratchspaces/c3e4b0f8-55cb-11ea-2926-15256bba5781/pkg_envs/env_zmqotbvsim/Manifest.toml` [e66e0078] ↑ CompilerSupportLibraries_jll v1.3.0+1 ⇒ v1.3.1+2 [458c3c95] ↑ OpenSSL_jll v3.5.4+0 ⇒ v3.5.6+0 Instantiating... === Precompiling... ===ªnbpkg_syncÚ  Waiting for other notebooks to finish Pkg operations... === Resolving... ===  Project No packages added to or removed from `~/.julia/scratchspaces/c3e4b0f8-55cb-11ea-2926-15256bba5781/pkg_envs/env_zmqotbvsim/Project.toml`  Updating `~/.julia/scratchspaces/c3e4b0f8-55cb-11ea-2926-15256bba5781/pkg_envs/env_zmqotbvsim/Manifest.toml` [e66e0078] ↑ CompilerSupportLibraries_jll v1.3.0+1 ⇒ v1.3.1+2 [458c3c95] ↑ OpenSSL_jll v3.5.4+0 ⇒ v3.5.6+0 Instantiating... === Precompiling... ===ªDataFramesÚ  Waiting for other notebooks to finish Pkg operations... === Resolving... ===  Project No packages added to or removed from `~/.julia/scratchspaces/c3e4b0f8-55cb-11ea-2926-15256bba5781/pkg_envs/env_zmqotbvsim/Project.toml`  Updating `~/.julia/scratchspaces/c3e4b0f8-55cb-11ea-2926-15256bba5781/pkg_envs/env_zmqotbvsim/Manifest.toml` [e66e0078] ↑ CompilerSupportLibraries_jll v1.3.0+1 ⇒ v1.3.1+2 [458c3c95] ↑ OpenSSL_jll v3.5.4+0 ⇒ v3.5.6+0 Instantiating... === Precompiling... ===¬UnitfulAstroÚ  Waiting for other notebooks to finish Pkg operations... === Resolving... ===  Project No packages added to or removed from `~/.julia/scratchspaces/c3e4b0f8-55cb-11ea-2926-15256bba5781/pkg_envs/env_zmqotbvsim/Project.toml`  Updating `~/.julia/scratchspaces/c3e4b0f8-55cb-11ea-2926-15256bba5781/pkg_envs/env_zmqotbvsim/Manifest.toml` [e66e0078] ↑ CompilerSupportLibraries_jll v1.3.0+1 ⇒ v1.3.1+2 [458c3c95] ↑ OpenSSL_jll v3.5.4+0 ⇒ v3.5.6+0 Instantiating... === Precompiling... ===¬LaTeXStringsÚ  Waiting for other notebooks to finish Pkg operations... === Resolving... ===  Project No packages added to or removed from `~/.julia/scratchspaces/c3e4b0f8-55cb-11ea-2926-15256bba5781/pkg_envs/env_zmqotbvsim/Project.toml`  Updating `~/.julia/scratchspaces/c3e4b0f8-55cb-11ea-2926-15256bba5781/pkg_envs/env_zmqotbvsim/Manifest.toml` [e66e0078] ↑ CompilerSupportLibraries_jll v1.3.0+1 ⇒ v1.3.1+2 [458c3c95] ↑ OpenSSL_jll v3.5.4+0 ⇒ v3.5.6+0 Instantiating... === Precompiling... ===¬MeasurementsÚ  Waiting for other notebooks to finish Pkg operations... === Resolving... ===  Project No packages added to or removed from `~/.julia/scratchspaces/c3e4b0f8-55cb-11ea-2926-15256bba5781/pkg_envs/env_zmqotbvsim/Project.toml`  Updating `~/.julia/scratchspaces/c3e4b0f8-55cb-11ea-2926-15256bba5781/pkg_envs/env_zmqotbvsim/Manifest.toml` [e66e0078] ↑ CompilerSupportLibraries_jll v1.3.0+1 ⇒ v1.3.1+2 [458c3c95] ↑ OpenSSL_jll v3.5.4+0 ⇒ v3.5.6+0 Instantiating... === Precompiling... ===§enabled÷restart_recommended_msgÀ´restart_required_msgÀ­busy_packages¶waiting_for_permissionÂÙ,waiting_for_permission_but_probably_disabled«cell_inputsŒÙ$780e6028-ab2f-44a4-bffd-edcd7e572d1c„§cell_idÙ$780e6028-ab2f-44a4-bffd-edcd7e572d1c¤codeÚÌbegin table_01 = DataFrame( gtype=String[], name=String[], logHI=Union{Float64,Missing}[], e_logHI=Union{Float64,Missing}[], logH2=Union{Float64,Missing}[], e_logH2=Union{Float64,Missing}[], logSFR=Union{Float64,Missing}[], e_logSFR=Union{Float64,Missing}[], ) raw_data_01 = CSV.read( "./data/aj351668t2_mrt.txt", DataFrame; delim='\t', skipto=50, header=false, ignorerepeated=true, silencewarnings=true, ) for row in eachrow(raw_data_01) data = row[1] gtype = strip(data[1:13]) name = strip(data[14:24]) logHI = parserWS(data[26:29]) e_logHI = parserWS(data[31:34]) logH2 = parserWS(data[36:39]) e_logH2 = parserWS(data[41:44]) logSFR = parserWS(data[46:50]) e_logSFR = parserWS(data[52:56]) push!(table_01, [gtype name logHI e_logHI logH2 e_logH2 logSFR e_logSFR]) end galaxy_list_01 = unique(table_01[!, "name"]) table_01_spirals = filter(:gtype => n -> n == "Spirals", table_01) end¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedÃÙ$5c39eaeb-b752-4564-8c61-306718be975f„§cell_idÙ$5c39eaeb-b752-4564-8c61-306718be975f¤codeÚbegin table_02 = DataFrame( gtype=String[], name=String[], logHI=Union{Float64,Missing}[], e_logHI=Union{Float64,Missing}[], SFR=Union{Float64,Missing}[], e_SFR=Union{Float64,Missing}[], ) raw_data_02 = CSV.read( "./data/aj351668t3_mrt.txt", DataFrame; delim='\t', skipto=48, header=false, ignorerepeated=true, silencewarnings=true, ) for row in eachrow(raw_data_02) data = row[1] gtype = strip(data[1:8]) name = strip(data[9:19]) logHI = parserWS(data[21:25]) e_logHI = parserWS(data[27:30]) SFR = parserWS(data[32:37]) e_SFR = parserWS(data[39:42]) push!(table_02, [gtype name logHI e_logHI SFR e_SFR]) end galaxy_list_02 = unique(table_02[!, "name"]) table_02_spirals = filter(:gtype => n -> n == "Spirals", table_02) end¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedÃÙ$f8d0cda2-2f5c-4f7a-b104-ab081e0d67a8„§cell_idÙ$f8d0cda2-2f5c-4f7a-b104-ab081e0d67a8¤codeÙ¨function get_col_01( n_gal::Int64, col::String, )::Vector{Union{Missing,Float64}} return filter(:name => n -> n == galaxy_list_01[n_gal], table_01)[!, col] end;¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedÂÙ$b77b1640-a3fb-11ee-13ec-2533240f5016„§cell_idÙ$b77b1640-a3fb-11ee-13ec-2533240f5016¤codeÙTusing CairoMakie, CSV, LaTeXStrings, DataFrames, Measurements, Unitful, UnitfulAstro¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedÂÙ$254b9b44-4025-4927-841f-f0d0b2062f23„§cell_idÙ$254b9b44-4025-4927-841f-f0d0b2062f23¤codeÚclet bigiel2008_spirals = [ "NGC 628", "NGC 3184", "NGC 3521", "NGC 4736", "NGC 5055", "NGC 5194", "NGC 6946", ] min_h2 = similar(bigiel2008_spirals, Float64) max_h2 = similar(bigiel2008_spirals, Float64) min_hi = similar(bigiel2008_spirals, Float64) max_hi = similar(bigiel2008_spirals, Float64) min_sfr = similar(bigiel2008_spirals, Float64) max_sfr = similar(bigiel2008_spirals, Float64) for (i, galaxy) in pairs(bigiel2008_spirals) reduced_table = filter(:name => n -> n == galaxy, table_01_spirals) logh2 = reduced_table[!, :logH2] loghi = reduced_table[!, :logHI] logsfr = reduced_table[!, :logSFR] h2_idxs = map(ismissing, logh2) hi_idxs = map(ismissing, loghi) sfr_idxs = map(ismissing, logsfr) delete_idxs = Vector{Bool}(h2_idxs .|| sfr_idxs .|| hi_idxs) deleteat!(logh2, delete_idxs) deleteat!(loghi, delete_idxs) deleteat!(logsfr, delete_idxs) min_h2[i], max_h2[i] = extrema(logh2) min_hi[i], max_hi[i] = extrema(loghi) min_sfr[i], max_sfr[i] = extrema(logsfr) end println("Ranges for spirals in Bigiel 2008 (seven spirals in Table 1):\n") println( "logΣH2 [Msun pc^-2] range: $((minimum(min_h2), maximum(max_h2)))" ) println( "logΣHI [Msun pc^-2] range: $((minimum(min_hi), maximum(max_hi)))" ) println( "logΣSFR [Msun yr^-1 kpc^-2] range: $((minimum(min_sfr), maximum(max_sfr)))" ) end¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedÃÙ$198d1cbd-dfe4-4dda-b04f-bea7f24421bb„§cell_idÙ$198d1cbd-dfe4-4dda-b04f-bea7f24421bb¤codeÚdlet n_gal = 1 HI = get_col_01(n_gal, "logHI") .± get_col_01(n_gal, "e_logHI") H2 = get_col_01(n_gal, "logH2") .± get_col_01(n_gal, "e_logH2") SFR = get_col_01(n_gal, "logSFR") .± get_col_01(n_gal, "e_logSFR") idxs = map(ismissing, HI) .|| map(ismissing, H2) .|| map(ismissing, SFR) deleteat!(HI, idxs) deleteat!(H2, idxs) deleteat!(SFR, idxs) set_theme!(theme_black()) f = Figure(size = (800, 800)) ax = Axis( f[1,1], xlabel=L"\mathrm{log(\Sigma_{H_I} \, / \, M_\odot \, pc^{-2})}", ylabel=L"\mathrm{log(\Sigma_{SFR} \, / \, M_\odot \, yr^{-1} \, kpc^{-2})}", title=L"\mathrm{%$(galaxy_list_01[n_gal])}", titlesize=30, xlabelsize=28, ylabelsize=28, xticklabelsize=20, yticklabelsize=20, ) scatter!( ax, Measurements.value.(HI), Measurements.value.(SFR), color=:red, markersize=5, ) errorbars!( ax, Measurements.value.(HI), Measurements.value.(SFR), Measurements.uncertainty.(SFR), color=:red, ) errorbars!( ax, Measurements.value.(HI), Measurements.value.(SFR), Measurements.uncertainty.(HI), color=:red, direction=:x ) f end¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedÃÙ$6797146a-b3a5-4cf0-bf2d-80f0934bb52b„§cell_idÙ$6797146a-b3a5-4cf0-bf2d-80f0934bb52b¤codeÚÃlet function limits( list::Vector{Union{Missing, Float64}}, log::Bool, source_unit::Union{Unitful.Units,Unitful.Quantity}, target_unit::Unitful.Units, )::Nothing raw_limits = extrema(collect(skipmissings(list)[1])) if log nice_limits = round.( log10.(ustrip.(target_unit, exp10.(raw_limits) .* source_unit)); digits=2, ) else nice_limits = round.( log10.(ustrip.(target_unit, raw_limits .* source_unit)); digits=2, ) end println("log10 range [$(target_unit)]: $(nice_limits)") return nothing end println("Table 2:\n") println("HI:") limits( table_01_spirals[!, :logHI], true, u"Msun * pc^-2", u"Msun * kpc^-2", ) println("\nH2:") limits( table_01_spirals[!, :logH2], true, u"Msun * pc^-2", u"Msun * kpc^-2", ) println("\nSFR:") limits( table_01_spirals[!, :logSFR], true, u"Msun * kpc^-2 * yr^-1", u"Msun * kpc^-2 * yr^-1", ) println("\n\nTable 3:\n") println("HI:") limits( table_02_spirals[!, :logHI], true, u"Msun * pc^-2", u"Msun * kpc^-2", ) println("\nSFR:") limits( table_02_spirals[!, :SFR], false, exp10(-5.0)u"Msun * kpc^-2 * yr^-1", u"Msun * kpc^-2 * yr^-1", ) end¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedÃÙ$e0fd87d5-087b-489f-88ba-13cb5e43cf1b„§cell_idÙ$e0fd87d5-087b-489f-88ba-13cb5e43cf1b¤codeÙ¨function get_col_02( n_gal::Int64, col::String, )::Vector{Union{Missing,Float64}} return filter(:name => n -> n == galaxy_list_02[n_gal], table_02)[!, col] end;¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedÂÙ$48c1620d-ecff-4367-bda8-41a3a4ce587d„§cell_idÙ$48c1620d-ecff-4367-bda8-41a3a4ce587d¤codeÚ>md""" # [Bigiel et al. (2010)](https://doi.org/10.1088/0004-6256/140/5/1194) ### [Data 01](https://content.cld.iop.org/journals/1538-3881/140/5/1194/revision1/aj351668t2_mrt.txt?Expires=1704202683&Signature=s7ZpfS53WATAEWuvDIz1td3ThKZQRQURYYpaWSiWmmPXVF9wlPZOhFYx1NUTK2FKFpntJO4QxVXjJhb4e0Y6aKs-WjhQUc4NW6iS6y1ZKH6wteR7hWXz7tDvlMndGu0OSdSZzgmAj2FBG~AW9LpuGmr7j3jBsJZ3Q5QVsEAab4asNffjhJuDSZPOyOfMFRV7oJlLJbpslNe1SsPRlSvB8bZe9yz3XBq7Cgq5egVNY~LWJZV41ZHwKw37Ua6emyfpTCXEtY5us6J9OIioWm0vn-VTQERG85Y~080czaFXr~tiUtrw4g6BAOo6YyY2kji0Pjp7NW-NuEBW89Q7DwFcsQ__&Key-Pair-Id=KL1D8TIY3N7T8) ### [Data 02](https://content.cld.iop.org/journals/1538-3881/140/5/1194/revision1/aj351668t3_mrt.txt?Expires=1704202683&Signature=H3ZNBU07v69wcT13o6h0B8Hh4FmIUcKLyBhYOWabfrpiie8BGhMghB7yTrlG~ctSv1FSshNXtA-YKzhybp7nSI8to1ItRkyzzmhx9cGfGihNMPuiOwGM-tCWy5TpWDKQTRe9gBqhHZm8qgSwgEs8izt5~20fmVKtrF6-LFdjxmFy7goGxxhggAdlBudLk45WVzZay~Qfp2iCmb4eGGKJxvNuj3zuU89VK6YO2P3va1uOIwZdFM8RgP58KwwZMy18izr71Fiq7aTpusJ-qudA-wwl8eLRx~UeVcc1Lg4l88SbtKVQxJlyALuQL0hF2ng64kqHA9xBRzaFJRe13ITP3g__&Key-Pair-Id=KL1D8TIY3N7T8) """¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedÃÙ$ac7bd34e-4e72-42e5-a969-41b2100ff7a9„§cell_idÙ$ac7bd34e-4e72-42e5-a969-41b2100ff7a9¤codeÙ¯function parserWS(data::AbstractString)::Union{Float64,Missing} clean_data = strip(data) !isempty(clean_data) || return missing return parse(Float64, clean_data) end;¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedÂÙ$3f6a2b0d-48e8-45dc-b2da-9b84e6244a1b„§cell_idÙ$3f6a2b0d-48e8-45dc-b2da-9b84e6244a1b¤codeÚ5let set_theme!(theme_black()) f = Figure(size = (800, 800)) ax = Axis( f[1,1], xlabel=L"\mathrm{log(\Sigma_{H_2} \, / \, M_\odot \, pc^{-2})}", ylabel=L"\mathrm{log(\Sigma_{SFR} \, / \, M_\odot \, yr^{-1} \, kpc^{-2})}", limits=(-2, 5, -4, 1), titlesize=30, xlabelsize=28, ylabelsize=28, xticklabelsize=20, yticklabelsize=20, ) for n_gal in eachindex(galaxy_list_01) H2 = get_col_01(n_gal, "logH2") .± get_col_01(n_gal, "e_logH2") SFR = get_col_01(n_gal, "logSFR") .± get_col_01(n_gal, "e_logSFR") idxs = map(ismissing, H2) .|| map(ismissing, SFR) deleteat!(H2, idxs) deleteat!(SFR, idxs) if any(isempty, [H2, SFR]) continue end scatter!( ax, Float64.(Measurements.value.(H2)), Float64.(Measurements.value.(SFR)), markersize=5, ) end f end¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedÃÙ$8f9b6a09-d5f4-46b8-ba75-d69f27195368„§cell_idÙ$8f9b6a09-d5f4-46b8-ba75-d69f27195368¤codeÚólet n_gal = 1 HI = get_col_02(n_gal, "logHI") .± get_col_02(n_gal, "e_logHI") SFR = get_col_02(n_gal, "SFR") .± get_col_02(n_gal, "e_SFR") idxs = map(ismissing, HI) .|| map(ismissing, SFR) deleteat!(HI, idxs) deleteat!(SFR, idxs) set_theme!(theme_black()) f = Figure(size = (800, 800)) ax = Axis( f[1,1], xlabel=L"\mathrm{log(\Sigma_{H_I} \, / \, M_\odot \, pc^{-2})}", ylabel=L"\mathrm{\Sigma_{SFR} \, / \, 10^{-5} \, M_\odot \, yr^{-1} \, kpc^{-2}}", title=L"\mathrm{%$(galaxy_list_02[n_gal])}", titlesize=30, xlabelsize=28, ylabelsize=28, xticklabelsize=20, yticklabelsize=20, ) scatter!( ax, Measurements.value.(HI), Measurements.value.(SFR), color=:red, markersize=5, ) errorbars!( ax, Measurements.value.(HI), Measurements.value.(SFR), Measurements.uncertainty.(SFR), color=:red, ) errorbars!( ax, Measurements.value.(HI), Measurements.value.(SFR), Measurements.uncertainty.(HI), color=:red, direction=:x ) f end¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedënotebook_idÙ$6b919f02-a613-11f1-b724-d7ada7be965b«in_temp_dir¨metadata€