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–’©"Spirals"ªtext/plain’©"NGC 628"ªtext/plain’¤0.38ªtext/plain’¤0.17ªtext/plain’¤4.02ªtext/plain’£0.7ªtext/plain¤more’Í€#–’©"Spirals"ªtext/plain’ª"NGC 7793"ªtext/plain’¥-0.18ªtext/plain’¤0.17ªtext/plain’§missingªtext/plain’£2.0ªtext/plain¨objectid°14a5677a859b1d30¦schema‚¥names–¥gtype¤name¥logHI§e_logHI£SFR¥e_SFR¥types–¦String¦String¨Float64?¨Float64?¨Float64?¨Float64?¤mimeÙ"application/vnd.pluto.table+object¬rootassigneeÀ²last_run_timestampËAÚ‘"ú6Ж°persist_js_state·has_pluto_hook_features§cell_idÙ$5c39eaeb-b752-4564-8c61-306718be975f¹depends_on_disabled_cells§runtimeÎp¯tXµpublished_object_keys¸depends_on_skipped_cells§erroredÂÙ$f8d0cda2-2f5c-4f7a-b104-ab081e0d67a8Š¦queued¤logs§running¦output†¤body ¤mimeªtext/plain¬rootassigneeÀ²last_run_timestampËAÚ‘"òºá/°persist_js_state·has_pluto_hook_features§cell_idÙ$f8d0cda2-2f5c-4f7a-b104-ab081e0d67a8¹depends_on_disabled_cells§runtimeÎ ±µpublished_object_keys¸depends_on_skipped_cells§erroredÂÙ$b77b1640-a3fb-11ee-13ec-2533240f5016Š¦queued¤logs§running¦output†¤body ¤mimeªtext/plain¬rootassigneeÀ²last_run_timestampËAÚ‘"ïnx°persist_js_state·has_pluto_hook_features§cell_idÙ$b77b1640-a3fb-11ee-13ec-2533240f5016¹depends_on_disabled_cells§runtimeÎøº µpublished_object_keys¸depends_on_skipped_cells§erroredÂÙ$254b9b44-4025-4927-841f-f0d0b2062f23Š¦queued¤logs‘ˆ¤lineÿ£msg’ÙÄRanges for spirals in Bigiel 2008 (seven spirals in Table 1):
logΣH2 [Msun pc^-2] range: (0.61, 2.79)
logΣHI [Msun pc^-2] range: (0.19, 1.29)
logΣSFR [Msun yr^-1 kpc^-2] range: (-2.99, -0.33)
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¤mime©text/html¬rootassigneeÀ²last_run_timestampËAÚ‘"ù¦t¸°persist_js_state·has_pluto_hook_features§cell_idÙ$198d1cbd-dfe4-4dda-b04f-bea7f24421bb¹depends_on_disabled_cells§runtimeÏ {"µpublished_object_keys¸depends_on_skipped_cells§erroredÂÙ$6797146a-b3a5-4cf0-bf2d-80f0934bb52bŠ¦queued¤logs‘ˆ¤lineÿ£msg’ÚTable 2:
HI:
log10 range [M⊙ kpc^-2]: (6.13, 7.33)
H2:
log10 range [M⊙ kpc^-2]: (6.61, 8.79)
SFR:
log10 range [M⊙ kpc^-2 yr^-1]: (-3.7, -0.33)
Table 3:
HI:
log10 range [M⊙ kpc^-2]: (5.74, 7.59)
SFR:
log10 range [M⊙ kpc^-2 yr^-1]: (-4.7, -2.14)
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Waiting for notebook process to start... Done. Starting precompilation...§enabled÷restart_recommended_msgÀ´restart_required_msgÀbusy_packages¶waiting_for_permissionÂÙ,waiting_for_permission_but_probably_disabled«cell_inputsŒÙ$780e6028-ab2f-44a4-bffd-edcd7e572d1c„§cell_idÙ$780e6028-ab2f-44a4-bffd-edcd7e572d1c¤codeÚÌbegin
table_01 = DataFrame(
gtype=String[],
name=String[],
logHI=Union{Float64,Missing}[],
e_logHI=Union{Float64,Missing}[],
logH2=Union{Float64,Missing}[],
e_logH2=Union{Float64,Missing}[],
logSFR=Union{Float64,Missing}[],
e_logSFR=Union{Float64,Missing}[],
)
raw_data_01 = CSV.read(
"./data/aj351668t2_mrt.txt",
DataFrame;
delim='\t',
skipto=50,
header=false,
ignorerepeated=true,
silencewarnings=true,
)
for row in eachrow(raw_data_01)
data = row[1]
gtype = strip(data[1:13])
name = strip(data[14:24])
logHI = parserWS(data[26:29])
e_logHI = parserWS(data[31:34])
logH2 = parserWS(data[36:39])
e_logH2 = parserWS(data[41:44])
logSFR = parserWS(data[46:50])
e_logSFR = parserWS(data[52:56])
push!(table_01, [gtype name logHI e_logHI logH2 e_logH2 logSFR e_logSFR])
end
galaxy_list_01 = unique(table_01[!, "name"])
table_01_spirals = filter(:gtype => n -> n == "Spirals", table_01)
end¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedÃÙ$5c39eaeb-b752-4564-8c61-306718be975f„§cell_idÙ$5c39eaeb-b752-4564-8c61-306718be975f¤codeÚ begin
table_02 = DataFrame(
gtype=String[],
name=String[],
logHI=Union{Float64,Missing}[],
e_logHI=Union{Float64,Missing}[],
SFR=Union{Float64,Missing}[],
e_SFR=Union{Float64,Missing}[],
)
raw_data_02 = CSV.read(
"./data/aj351668t3_mrt.txt",
DataFrame;
delim='\t',
skipto=48,
header=false,
ignorerepeated=true,
silencewarnings=true,
)
for row in eachrow(raw_data_02)
data = row[1]
gtype = strip(data[1:8])
name = strip(data[9:19])
logHI = parserWS(data[21:25])
e_logHI = parserWS(data[27:30])
SFR = parserWS(data[32:37])
e_SFR = parserWS(data[39:42])
push!(table_02, [gtype name logHI e_logHI SFR e_SFR])
end
galaxy_list_02 = unique(table_02[!, "name"])
table_02_spirals = filter(:gtype => n -> n == "Spirals", table_02)
end¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedÃÙ$f8d0cda2-2f5c-4f7a-b104-ab081e0d67a8„§cell_idÙ$f8d0cda2-2f5c-4f7a-b104-ab081e0d67a8¤codeÙ¨function get_col_01(
n_gal::Int64,
col::String,
)::Vector{Union{Missing,Float64}}
return filter(:name => n -> n == galaxy_list_01[n_gal], table_01)[!, col]
end;¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedÂÙ$b77b1640-a3fb-11ee-13ec-2533240f5016„§cell_idÙ$b77b1640-a3fb-11ee-13ec-2533240f5016¤codeÙTusing CairoMakie, CSV, LaTeXStrings, DataFrames, Measurements, Unitful, UnitfulAstro¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedÂÙ$254b9b44-4025-4927-841f-f0d0b2062f23„§cell_idÙ$254b9b44-4025-4927-841f-f0d0b2062f23¤codeÚclet
bigiel2008_spirals = [
"NGC 628",
"NGC 3184",
"NGC 3521",
"NGC 4736",
"NGC 5055",
"NGC 5194",
"NGC 6946",
]
min_h2 = similar(bigiel2008_spirals, Float64)
max_h2 = similar(bigiel2008_spirals, Float64)
min_hi = similar(bigiel2008_spirals, Float64)
max_hi = similar(bigiel2008_spirals, Float64)
min_sfr = similar(bigiel2008_spirals, Float64)
max_sfr = similar(bigiel2008_spirals, Float64)
for (i, galaxy) in pairs(bigiel2008_spirals)
reduced_table = filter(:name => n -> n == galaxy, table_01_spirals)
logh2 = reduced_table[!, :logH2]
loghi = reduced_table[!, :logHI]
logsfr = reduced_table[!, :logSFR]
h2_idxs = map(ismissing, logh2)
hi_idxs = map(ismissing, loghi)
sfr_idxs = map(ismissing, logsfr)
delete_idxs = Vector{Bool}(h2_idxs .|| sfr_idxs .|| hi_idxs)
deleteat!(logh2, delete_idxs)
deleteat!(loghi, delete_idxs)
deleteat!(logsfr, delete_idxs)
min_h2[i], max_h2[i] = extrema(logh2)
min_hi[i], max_hi[i] = extrema(loghi)
min_sfr[i], max_sfr[i] = extrema(logsfr)
end
println("Ranges for spirals in Bigiel 2008 (seven spirals in Table 1):\n")
println(
"logΣH2 [Msun pc^-2] range: $((minimum(min_h2), maximum(max_h2)))"
)
println(
"logΣHI [Msun pc^-2] range: $((minimum(min_hi), maximum(max_hi)))"
)
println(
"logΣSFR [Msun yr^-1 kpc^-2] range: $((minimum(min_sfr), maximum(max_sfr)))"
)
end¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedÃÙ$198d1cbd-dfe4-4dda-b04f-bea7f24421bb„§cell_idÙ$198d1cbd-dfe4-4dda-b04f-bea7f24421bb¤codeÚdlet
n_gal = 1
HI = get_col_01(n_gal, "logHI") .± get_col_01(n_gal, "e_logHI")
H2 = get_col_01(n_gal, "logH2") .± get_col_01(n_gal, "e_logH2")
SFR = get_col_01(n_gal, "logSFR") .± get_col_01(n_gal, "e_logSFR")
idxs = map(ismissing, HI) .|| map(ismissing, H2) .|| map(ismissing, SFR)
deleteat!(HI, idxs)
deleteat!(H2, idxs)
deleteat!(SFR, idxs)
set_theme!(theme_black())
f = Figure(size = (800, 800))
ax = Axis(
f[1,1],
xlabel=L"\mathrm{log(\Sigma_{H_I} \, / \, M_\odot \, pc^{-2})}",
ylabel=L"\mathrm{log(\Sigma_{SFR} \, / \, M_\odot \, yr^{-1} \, kpc^{-2})}",
title=L"\mathrm{%$(galaxy_list_01[n_gal])}",
titlesize=30,
xlabelsize=28,
ylabelsize=28,
xticklabelsize=20,
yticklabelsize=20,
)
scatter!(
ax,
Measurements.value.(HI),
Measurements.value.(SFR),
color=:red,
markersize=5,
)
errorbars!(
ax,
Measurements.value.(HI),
Measurements.value.(SFR),
Measurements.uncertainty.(SFR),
color=:red,
)
errorbars!(
ax,
Measurements.value.(HI),
Measurements.value.(SFR),
Measurements.uncertainty.(HI),
color=:red,
direction=:x
)
f
end¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedÃÙ$6797146a-b3a5-4cf0-bf2d-80f0934bb52b„§cell_idÙ$6797146a-b3a5-4cf0-bf2d-80f0934bb52b¤codeÚÃlet
function limits(
list::Vector{Union{Missing, Float64}},
log::Bool,
source_unit::Union{Unitful.Units,Unitful.Quantity},
target_unit::Unitful.Units,
)::Nothing
raw_limits = extrema(collect(skipmissings(list)[1]))
if log
nice_limits = round.(
log10.(ustrip.(target_unit, exp10.(raw_limits) .* source_unit));
digits=2,
)
else
nice_limits = round.(
log10.(ustrip.(target_unit, raw_limits .* source_unit));
digits=2,
)
end
println("log10 range [$(target_unit)]: $(nice_limits)")
return nothing
end
println("Table 2:\n")
println("HI:")
limits(
table_01_spirals[!, :logHI],
true,
u"Msun * pc^-2",
u"Msun * kpc^-2",
)
println("\nH2:")
limits(
table_01_spirals[!, :logH2],
true,
u"Msun * pc^-2",
u"Msun * kpc^-2",
)
println("\nSFR:")
limits(
table_01_spirals[!, :logSFR],
true,
u"Msun * kpc^-2 * yr^-1",
u"Msun * kpc^-2 * yr^-1",
)
println("\n\nTable 3:\n")
println("HI:")
limits(
table_02_spirals[!, :logHI],
true,
u"Msun * pc^-2",
u"Msun * kpc^-2",
)
println("\nSFR:")
limits(
table_02_spirals[!, :SFR],
false,
exp10(-5.0)u"Msun * kpc^-2 * yr^-1",
u"Msun * kpc^-2 * yr^-1",
)
end¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedÃÙ$e0fd87d5-087b-489f-88ba-13cb5e43cf1b„§cell_idÙ$e0fd87d5-087b-489f-88ba-13cb5e43cf1b¤codeÙ¨function get_col_02(
n_gal::Int64,
col::String,
)::Vector{Union{Missing,Float64}}
return filter(:name => n -> n == galaxy_list_02[n_gal], table_02)[!, col]
end;¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedÂÙ$48c1620d-ecff-4367-bda8-41a3a4ce587d„§cell_idÙ$48c1620d-ecff-4367-bda8-41a3a4ce587d¤codeÚ>md"""
# [Bigiel et al. (2010)](https://doi.org/10.1088/0004-6256/140/5/1194)
### [Data 01](https://content.cld.iop.org/journals/1538-3881/140/5/1194/revision1/aj351668t2_mrt.txt?Expires=1704202683&Signature=s7ZpfS53WATAEWuvDIz1td3ThKZQRQURYYpaWSiWmmPXVF9wlPZOhFYx1NUTK2FKFpntJO4QxVXjJhb4e0Y6aKs-WjhQUc4NW6iS6y1ZKH6wteR7hWXz7tDvlMndGu0OSdSZzgmAj2FBG~AW9LpuGmr7j3jBsJZ3Q5QVsEAab4asNffjhJuDSZPOyOfMFRV7oJlLJbpslNe1SsPRlSvB8bZe9yz3XBq7Cgq5egVNY~LWJZV41ZHwKw37Ua6emyfpTCXEtY5us6J9OIioWm0vn-VTQERG85Y~080czaFXr~tiUtrw4g6BAOo6YyY2kji0Pjp7NW-NuEBW89Q7DwFcsQ__&Key-Pair-Id=KL1D8TIY3N7T8)
### [Data 02](https://content.cld.iop.org/journals/1538-3881/140/5/1194/revision1/aj351668t3_mrt.txt?Expires=1704202683&Signature=H3ZNBU07v69wcT13o6h0B8Hh4FmIUcKLyBhYOWabfrpiie8BGhMghB7yTrlG~ctSv1FSshNXtA-YKzhybp7nSI8to1ItRkyzzmhx9cGfGihNMPuiOwGM-tCWy5TpWDKQTRe9gBqhHZm8qgSwgEs8izt5~20fmVKtrF6-LFdjxmFy7goGxxhggAdlBudLk45WVzZay~Qfp2iCmb4eGGKJxvNuj3zuU89VK6YO2P3va1uOIwZdFM8RgP58KwwZMy18izr71Fiq7aTpusJ-qudA-wwl8eLRx~UeVcc1Lg4l88SbtKVQxJlyALuQL0hF2ng64kqHA9xBRzaFJRe13ITP3g__&Key-Pair-Id=KL1D8TIY3N7T8)
"""¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedÃÙ$ac7bd34e-4e72-42e5-a969-41b2100ff7a9„§cell_idÙ$ac7bd34e-4e72-42e5-a969-41b2100ff7a9¤codeÙ¯function parserWS(data::AbstractString)::Union{Float64,Missing}
clean_data = strip(data)
!isempty(clean_data) || return missing
return parse(Float64, clean_data)
end;¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedÂÙ$3f6a2b0d-48e8-45dc-b2da-9b84e6244a1b„§cell_idÙ$3f6a2b0d-48e8-45dc-b2da-9b84e6244a1b¤codeÚ5let
set_theme!(theme_black())
f = Figure(size = (800, 800))
ax = Axis(
f[1,1],
xlabel=L"\mathrm{log(\Sigma_{H_2} \, / \, M_\odot \, pc^{-2})}",
ylabel=L"\mathrm{log(\Sigma_{SFR} \, / \, M_\odot \, yr^{-1} \, kpc^{-2})}",
limits=(-2, 5, -4, 1),
titlesize=30,
xlabelsize=28,
ylabelsize=28,
xticklabelsize=20,
yticklabelsize=20,
)
for n_gal in eachindex(galaxy_list_01)
H2 = get_col_01(n_gal, "logH2") .± get_col_01(n_gal, "e_logH2")
SFR = get_col_01(n_gal, "logSFR") .± get_col_01(n_gal, "e_logSFR")
idxs = map(ismissing, H2) .|| map(ismissing, SFR)
deleteat!(H2, idxs)
deleteat!(SFR, idxs)
if any(isempty, [H2, SFR])
continue
end
scatter!(
ax,
Float64.(Measurements.value.(H2)),
Float64.(Measurements.value.(SFR)),
markersize=5,
)
end
f
end¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedÃÙ$8f9b6a09-d5f4-46b8-ba75-d69f27195368„§cell_idÙ$8f9b6a09-d5f4-46b8-ba75-d69f27195368¤codeÚólet
n_gal = 1
HI = get_col_02(n_gal, "logHI") .± get_col_02(n_gal, "e_logHI")
SFR = get_col_02(n_gal, "SFR") .± get_col_02(n_gal, "e_SFR")
idxs = map(ismissing, HI) .|| map(ismissing, SFR)
deleteat!(HI, idxs)
deleteat!(SFR, idxs)
set_theme!(theme_black())
f = Figure(size = (800, 800))
ax = Axis(
f[1,1],
xlabel=L"\mathrm{log(\Sigma_{H_I} \, / \, M_\odot \, pc^{-2})}",
ylabel=L"\mathrm{\Sigma_{SFR} \, / \, 10^{-5} \, M_\odot \, yr^{-1} \, kpc^{-2}}",
title=L"\mathrm{%$(galaxy_list_02[n_gal])}",
titlesize=30,
xlabelsize=28,
ylabelsize=28,
xticklabelsize=20,
yticklabelsize=20,
)
scatter!(
ax,
Measurements.value.(HI),
Measurements.value.(SFR),
color=:red,
markersize=5,
)
errorbars!(
ax,
Measurements.value.(HI),
Measurements.value.(SFR),
Measurements.uncertainty.(SFR),
color=:red,
)
errorbars!(
ax,
Measurements.value.(HI),
Measurements.value.(SFR),
Measurements.uncertainty.(HI),
color=:red,
direction=:x
)
f
end¨metadataƒ©show_logsèdisabled®skip_as_script«code_foldedënotebook_idÙ$508a604a-74fe-11f1-9db7-0d4469b08f92«in_temp_dir¨metadata€